A lighthouse on a rocky coastline with the ocean in the foreground.

San Juan Islands hotel guide. Wyndham Hotels hotel in San Juan Islands, Washington

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
24 Sept - 25 Sept
Tomorrow
25 Sept - 26 Sept
This weekend
25 Sept - 27 Sept
Next weekend
2 Oct - 4 Oct
Save an average of 15% on thousands of hotels when you're signed in

Top San Juan Islands Hotel Reviews

Discovery Inn

Discovery Inn

10/10 Excellent
"Staff was very helpful. Hot tub was great, used it one night and the next morning. Wife loved the small touches like fresh flowers, chocolates, robes in room. Good coffee maker and tea selection. Location was away from busy downtown, but was able to walk to church from there. Would definitely stay there again."
John 1-night trip
Posted 14 hours ago
Discovery Inn
Friday Harbor Suites

Friday Harbor Suites

10/10 Excellent
"Hotel overall was pleasant. Staff was friendly. Room was clean and roomy w patio area. Cute cafe. The only thing bothered me was the narrow hallway to the room."
Jo Wei 1-night trip
Posted 1 day ago
Friday Harbor Suites
The Orca Inn

The Orca Inn

8/10 Good
"Orca Inn is a no frills place to stay, small room, but met our needs for a place to sleep. It was clean and quite. Staff was nice and allowed a very early checkin."
Michael 1-night trip
Posted 2 days ago
The Orca Inn
Outlook Inn

Outlook Inn

10/10 Excellent
"Great atmosphere!"
Corey 2-night trip
Posted 6 days ago
Outlook Inn
The Edenwild Boutique Inn

The Edenwild Boutique Inn

10/10 Excellent
"Beautiful place! Friendly staff. Great breakfast."
Lorenz 1-night trip
Posted 10 days ago
The Edenwild Boutique Inn
Inn to the Woods B&B

Inn to the Woods B&B

10/10 Excellent
"The most charming B&B with a private hot tub, delicious breakfast, wonderful hosts, and 2 very cute dogs"
Betsy 3-night trip
Posted 2 weeks ago
Inn to the Woods B&B
Deer Harbor Inn

Deer Harbor Inn

8/10 Good
"It’s very basic considering the cost. The bed is very soft and not particularly comfortable with 2 people of different weights. Everything just felt a bit thrown together, which is ok but at this price point we had higher expectations."
Clare 1-night trip
Posted 2 weeks ago
Deer Harbor Inn
Trumpeter Inn

Trumpeter Inn

10/10 Excellent
"A magical stay with amazing breakfast each day and cute farm animals to visit. Loved everything about it 💗"
James 3-night trip
Posted 3 weeks ago
Trumpeter Inn
West Beach Resort

West Beach Resort

10/10 Excellent
"Loved the privacy of the cabin and personal Hot tub"
Jeannine 1-night trip
Posted 3 months ago
West Beach Resort

Explore a world of travel with Expedia