A seaside view with a white umbrella and wicker chairs.

Search Boutique Hotels in Heraklion

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Heraklion Boutique Hotels

Tonight
25 Oct - 26 Oct
Tomorrow
26 Oct - 27 Oct
Next weekend
30 Oct - 1 Nov
In two weeks
6 Nov - 8 Nov

Our top choices for Heraklion boutique hotels

A table with a glass of water, a cup, and sunglasses on a balcony overlooking a harbor with boats and a historic fort.
A marina at dusk with boats docked, a prominent building, and a calm waterfront.
A modern hotel entrance with glass doors, a potted plant, and a red interior visible through the glass.
A waterfront restaurant with a view of the sea and a historic fort.

1. Lato Boutique Hotel

Lato Boutique Hotel
Heraklion
United States
Matthew
Rp1.353.535
Rp1.601.725 total
includes taxes & fees
15 Nov - 16 Nov
Lato Boutique Hotel
A modern bedroom with a large bed, a glass partition, a view of the city, and a small wooden table.
A modern living room with a sofa, coffee table, and a view of the street outside.
A rooftop terrace with a wooden deck, a hot tub, and seating areas.
A modern restaurant with a long dining table, multiple chairs, and a large window with natural light.

2. Dom Boutique Hotel

Dom Boutique Hotel
Heraklion
Australia
Marcia
Rp2.017.215
Rp2.357.468 total
includes taxes & fees
16 Nov - 17 Nov
Dom Boutique Hotel
A modern outdoor lounge area with a pool, wooden furniture, and a view of the sea.
A modern living space with a sofa, a dining table with chairs, a hanging light fixture, and large windows.
An outdoor dining area with wooden tables and chairs, a stone wall bar, and a pool in the background.
A modern hotel room with a balcony, a desk, a chair, and a sofa.

3. Casa Blu - Adults Only by Checkin

Casa Blu - Adults Only by Checkin
Hersonissos
France
Elsa Janine Berbiche
Rp1.652.310
Rp2.083.646 total
includes taxes & fees
26 Oct - 27 Oct
Casa Blu - Adults Only by Checkin
A modern rooftop terrace with a palm tree, a bar area, and a view of the cityscape.
A modern hotel with a rooftop pool area, multiple lounge chairs, and a glass-enclosed pool.
Room
A spacious dining area with large windows, wooden tables, and chairs, and a buffet with various food items.

4. Axel Beach Crete - Adults Only

Axel Beach Crete - Adults Only
Hersonissos
Germany
Marvin
Axel Beach Crete - Adults Only
A modern two-story building with a glass-enclosed upper level, a swimming pool with lounge chairs, and a well-lit interior.
A beach with clear turquoise water, rocky shoreline, and distant buildings.
A modern living room with a black sofa, yellow armchairs, and a black sectional sofa. There is a flat-screen TV and a round coffee table.
A person in a white robe standing by a balcony with a view of the sea and greenery.

5. Harma Boutique Hotel

Harma Boutique Hotel
Hersonissos
United Kingdom
Helen
Harma Boutique Hotel
A modern room with a large sliding glass door leading to a balcony with two sun loungers and a table.
A hotel room with a bed, a TV mounted on the wall, a black console table, and a view of the ocean through sheer curtains.
A modern hotel lobby with a reception desk, seating area, and large windows offering views of the outdoors.
A poolside area with lounge chairs and a table, overlooking the sea.

6. Castello Boutique Resort & Spa - Adults Only

Castello Boutique Resort & Spa - Adults Only
Agios Nikolaos
United Kingdom
philip
Rp1.590.908
Rp1.887.727 total
includes taxes & fees
1 Nov - 2 Nov
Castello Boutique Resort & Spa - Adults Only
A clear view of a large body of water with a yacht docked at a pier, a swimming pool, and a distant mountain range.
A hotel room with a bed, a desk, a chair, a mirror, and a view of the sea.
A multi-story hotel with balconies, a swimming pool, and a view of the mountains.
A modern kitchen with a coffee maker, a dining area with a table and chairs, and a balcony with a view of the sea.

7. Minos Boutique Hotel Agia Galini

Minos Boutique Hotel Agia Galini
Agios Vasileios
Canada
Jean-Marc
Rp1.335.052
Rp1.546.532 total
includes taxes & fees
1 Nov - 2 Nov
Minos Boutique Hotel Agia Galini
A table with breakfast items and drinks, overlooking a body of water and mountains.
A spacious dining area with large windows offering a view of the sea and mountains.
A swimming pool with a clear view of the sea and mountains in the background.
A coastal landscape with a rocky hillside, a beach, and a clear blue sea.

8. Palazzo Greco

Palazzo Greco
Agios Vasileios
United Kingdom
John
Rp1.287.614
Rp1.664.811 total
includes taxes & fees
29 Oct - 30 Oct
Palazzo Greco
A swimming pool with lounge chairs and umbrellas, a bar area, and a mountain view.
A restaurant with stone walls, large windows, and outdoor tropical plants. Tables are set with wine glasses and plates.
A bar area with a green bar counter, black bar stools, and overhead pendant lights.
A person standing near a palm tree, wearing a hat and a pink top, with a black bag.

9. Angela Suites Boutique Hotel

Angela Suites Boutique Hotel
Agios Nikolaos
Sweden
Arvid
Rp2.287.209
Rp2.901.266 total
includes taxes & fees
26 Oct - 27 Oct
Angela Suites Boutique Hotel
A pool area with lounge chairs and palm trees, overlooking the ocean.
A balcony with two sun loungers, a small table with a book, and a view of the ocean.
A beachside hotel with multiple balconies, palm trees, and beach chairs.
A modern hotel room with a balcony overlooking the sea, a sofa, two chairs, and a small table.

10. Riviera Beach Hotel

Riviera Beach Hotel
Hersonissos
Germany
JessicaEhghol
Rp3.042.044
Rp3.564.557 total
includes taxes & fees
26 Oct - 27 Oct
Riviera Beach Hotel
View all properties

Top Heraklion Hotel Reviews

GDM Megaron Historical Monument Hotel

GDM Megaron Historical Monument Hotel

10/10 Excellent
"My husband and I stayed here overnight before our flight back to LA and it was perfect. It’s a gorgeous and chic historical hotel. The staff was friendly and accommodating and gave us a nice complimentary upgrade for our anniversary (so sweet!). The housekeeping woman was also so nice and left us some local treats and Raki. The room was huge and the bed was also really comfortable (I am very picky with beds, especially in Europe). The large bathroom was by far the nicest of all of the hotels we stayed throughout our time in Greece with Korres bath products which was a very classy touch. Amazing rain shower and water pressure. Make sure not to leave Greece without picking up some Korres! The rooftop is perfect for sunset drinks. We didn’t have time for the pool, but if we were there for longer we definitely would have taken advantage. It’s on the smaller side but perfect for a quick dip. It is also very well located in a safe area and walking distance to so many shops and restaurants while also being a quick drive to the airport for an early departure. We had a nice time walking along the marina and checking out all of the boats and grabbing a fresh seafood dinner on the water. We were trying to locate a specific type of unique souvenir we had been looking for but couldn’t find throughout our trip, and the front desk receptionist was very helpful in helping us find it a short walk away! Will come back for longer next time, thanks GDM!"
Lillie 1-night trip
Posted 3 days ago
GDM Megaron Historical Monument Hotel
Olive Green Hotel

Olive Green Hotel

10/10 Excellent
"Very nice, clean, and centrally located hotel. About 20 minutes walk from the port. A few minutes walk to Heraklion's Archeological Museum which is a must-see in Heraklion. Many restaurants and local stores around. At night it can be a bit noisy but that is the advantage of being close to many attractions. The staff were very friendly and helpful. There's also laundry and luggage storage services nearby for those who may wa t to store their luggage while traveling to islands. Highly recommended and would stay here again."
Arash 1-night trip
Posted 6 days ago
Olive Green Hotel

Frequently asked questions

What's the best boutique-style hotel in Heraklion?
Lato Boutique Hotel is a favourite hotel with our travellers looking for stylish accommodation, and features 79 guestrooms, free WiFi and a terrace. If you'd prefer to stay at a boutique hotel, you can also take a look at Dom Boutique Hotel.
What's there to see and do in Heraklion?
Visitors speak positively about this destination's major shopping centres, top museums and interesting historical sites. Activities and attractions to experience around Heraklion include Heraklion Port, Heraklion Loggia and Heraklion Town Hall. You might also like to explore more of the area and take in additional sights like Lions Square, Heraklion Archaeological Museum and Historical Museum of Crete while you're here.
What kind of weather should I plan for when I travel to Heraklion?
Getting an idea of what to expect from the weather in Heraklion is important when planning your trip. The hottest months are usually July and August, with an average temperature of 25°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Heraklion is 350 mm.
What's the best way to get to my boutique hotel in Heraklion?
You have a few options for travelling to and around Heraklion. The closest major airport is Heraklion (HER-Nikos Kazantzakis), which is located 2.3 mi (3.7 km) from the heart of the city. If you'd like to explore around the area, you may want a rental car for your journey.