What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighbourhood include The Dana on Mission Bay and Hyatt Regency Mission Bay Spa and Marina .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches and North Cove Beach while you're in Mission Bay. You could also plan a visit to Mission Bay or The Dana On Mission Bay, BW Premier Collection while you're in the neighbourhood. Don't miss favourite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot and Hotel Circle. When you're sightseeing in San Diego, Crown Point Shores and Marina Village Conference Center are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

2 outdoor pools, a heated pool, pool loungers

1. The Dana on Mission Bay

Mission Bay

Loretta

Rp5.279.694 total

includes taxes & fees

23 Aug - 24 Aug

Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

2. San Diego Mission Bay Resort

Mission Bay

Terri

Rp6.313.775 total

includes taxes & fees

24 Aug - 25 Aug

5 outdoor pools, a heated pool, pool umbrellas, pool loungers

3. Paradise Point Resort & Spa

Mission Bay

Rachel Ann

Rp5.928.873 total

includes taxes & fees

23 Aug - 24 Aug

2 outdoor pools, pool cabanas (surcharge), pool umbrellas

4. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

kyle

Rp6.007.534 total

includes taxes & fees

26 Aug - 27 Aug

5. Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

marissa

Rp2.744.725 total

includes taxes & fees

18 Aug - 19 Aug

6. Heritage Inn San Diego

2.2 km from Mission Bay

Ivan

Rp1.392.572 total

includes taxes & fees

25 Aug - 26 Aug

7. Comfort Inn Sea World Area

2.9 km from Mission Bay

Othoniel

Rp2.701.409 total

includes taxes & fees

4 Aug - 5 Aug

Studio Suite, 1 King Bed, Courtyard View | View from room

8. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

2.8 km from Mission Bay

Dominador

Rp3.050.897 total

includes taxes & fees

16 Aug - 17 Aug

9. Old Town Inn

3.5 km from Mission Bay

Jennifer

Rp3.386.178 total

includes taxes & fees

25 Aug - 26 Aug

In-room safe, desk, laptop workspace, blackout curtains

10. Holiday Inn Express San Diego - SeaWorld Area by IHG

2.3 km from Mission Bay

Sindia

Rp2.917.314 total

includes taxes & fees

16 Aug - 17 Aug

11. Kings Inn San Diego

4.9 km from Mission Bay

Manuel

Rp2.677.404 total

includes taxes & fees

24 Aug - 25 Aug

Outdoor pool, pool umbrellas, pool loungers

12. Handlery Hotel

5 km from Mission Bay

Gregory

Rp2.775.930 total

includes taxes & fees

24 Aug - 25 Aug

13. Best Western Seven Seas

5.6 km from Mission Bay

John

Rp1.945.523 total

includes taxes & fees

9 Aug - 10 Aug

14. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Dennis

Rp2.340.211 total

includes taxes & fees

16 Aug - 17 Aug

15. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.7 km from Mission Bay

Allan

Rp3.148.745 total

includes taxes & fees

3 Aug - 4 Aug

16. Bahia Resort Hotel

Central Mission Beach, 2.3 km from Mission Bay

Gary

Rp5.848.263 total

includes taxes & fees

23 Aug - 24 Aug

Studio Suite, 1 King Bed with Sofa bed, Balcony | View from room

17. Sheraton San Diego Resort

6 km from Mission Bay

Andre

Rp4.427.442 total

includes taxes & fees

3 Aug - 4 Aug

18. Legacy Resort Hotel & Spa

5.3 km from Mission Bay

Shakundala

Rp3.625.062 total

includes taxes & fees

2 Aug - 3 Aug

19. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

3.6 km from Mission Bay

Merlyn A.

Rp3.408.673 total

includes taxes & fees

23 Aug - 24 Aug

20. Days Inn by Wyndham San Diego Hotel Circle

5.5 km from Mission Bay

Jessica

Rp2.226.128 total

includes taxes & fees

17 Aug - 18 Aug

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

A plaza with a traditional building, benches, and a large tree.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A beach with surfers and swimmers during sunset.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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A roller coaster under construction with scaffolding and a ticket booth in the foreground.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

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A beach with palm trees, a hotel, and people enjoying the sand and water.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach and Dog Beach.

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Top Mission Bay Hotel Reviews

California Suites Hotel

10/10 Excellent

"Staff was very kind and helpful!"

Days Inn by Wyndham San Diego Hotel Circle

8/10 Good

"Stayed on a weekday in summer and it was pretty packed. Room was quiet, comfortable and clean. There is a breakfast room with free coffee and creamer and vending machines if you’re hungry. Pool area was ok but lots of families with little kids using it (I know, what do you expect?!?) and the water was cloudy. Lots of chaise lounges and a few outdoor seating areas. Wi-Fi seems to have been maxed out in the evenings."

Omni San Diego Hotel at the Ballpark

8/10 Good

"My daughter and I were in town for Comic Con this year (2026) and needed a nice hotel to stay in which was close to the convention center: the Omni at the Ballpark certainly fit that bill. (I am a writer and had a booth at the convention.) We found the servers at the Fres.co (breakfast) and at Tortuga (lunch) to be very kind (the staff in general was eager to please). We availed ourselves of the pool and hot tub. The beds were comfortable. My only complaint is that Saturday night there was a private party at the pool. It ran well past midnight. It was very difficult to sleep with all of the noise."

Search Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

2. San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

5. Wyndham Garden San Diego Near SeaWorld

6. Heritage Inn San Diego

7. Comfort Inn Sea World Area

8. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

9. Old Town Inn

10. Holiday Inn Express San Diego - SeaWorld Area by IHG

11. Kings Inn San Diego

12. Handlery Hotel

13. Best Western Seven Seas

14. GreenTree Inn San Diego Mission Bay

15. Best Western Plus Hacienda Hotel Old Town

16. Bahia Resort Hotel

17. Sheraton San Diego Resort

18. Legacy Resort Hotel & Spa

19. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

20. Days Inn by Wyndham San Diego Hotel Circle

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Ocean Beach

Top Mission Bay Hotel Reviews

California Suites Hotel

Frequently asked questions