What is Mission Bay like?

You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.

What's a favourite hotel to stay in Mission Bay?

Based on our traveller data, San Diego Mission Bay Resort is one of the top choices for your stay in Mission Bay. This resort offers a full-service spa and 2 restaurants. Other good options for your stay in the neighbourhood include Paradise Point Resort & Spa and The Dana on Mission Bay .

How many hotels should I expect to find in the Mission Bay area?

If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?

Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.

What is there to do around this San Diego neighbourhood?

Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighbourhood. Mission Beach and Hotel Circle are some popular places to visit in the area around Mission Bay. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.

The Best Hotels in Mission Bay, San Diego - 2026 Updated Prices

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Our top choices for Mission Bay hotels

Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)

1. San Diego Mission Bay Resort

Mission Bay

Jean-Michelle

Rp6.466.749 total

includes taxes & fees

28 Jun - 29 Jun

3 outdoor pools, pool cabanas (surcharge), pool umbrellas

2. Hyatt Regency Mission Bay Spa and Marina

Mission Bay

Yesenia

Rp4.640.207 total

includes taxes & fees

17 Jun - 18 Jun

5 outdoor pools, a heated pool, pool umbrellas, pool loungers

3. Paradise Point Resort & Spa

Mission Bay

Myesha

Rp6.446.924 total

includes taxes & fees

18 Jun - 19 Jun

2 outdoor pools, a heated pool, pool loungers

4. The Dana on Mission Bay

Mission Bay

Jamie

Rp5.009.186 total

includes taxes & fees

15 Jun - 16 Jun

5. Crowne Plaza San Diego - Mission Valley by IHG

4 km from Mission Bay

amanda

Rp2.572.376 total

includes taxes & fees

29 Jun - 30 Jun

3 bars/lounges, lobby lounge, cocktail bar, cocktail bar

6. Lafayette Hotel & Club

8.1 km from Mission Bay

Tianna

Rp5.111.889 total

includes taxes & fees

16 Jun - 17 Jun

3 restaurants; breakfast, lunch and dinner served

7. Wyndham San Diego Bayside

8 km from Mission Bay

Carlos

Rp4.328.192 total

includes taxes & fees

14 Jun - 15 Jun

8. Embassy Suites by Hilton San Diego Bay Downtown

8.7 km from Mission Bay

Francesca Elisa

Rp4.716.112 total

includes taxes & fees

7 Jul - 8 Jul

9. Holiday Inn Express San Diego Airport - Old Town by IHG

4.8 km from Mission Bay

Ronald

Rp3.284.668 total

includes taxes & fees

14 Jun - 15 Jun

10. Wyndham Garden San Diego Near SeaWorld

2.6 km from Mission Bay

Hector

Rp2.442.972 total

includes taxes & fees

15 Jun - 16 Jun

11. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.7 km from Mission Bay

Rebecca

Rp3.104.011 total

includes taxes & fees

16 Jun - 17 Jun

12. Courtyard by Marriott San Diego Airport/Liberty Station

5 km from Mission Bay

Patricia

Rp4.001.343 total

includes taxes & fees

28 Jun - 29 Jun

13. The Alcala Hotel Mission Valley/Seaworld

3.6 km from Mission Bay

Brittney

Rp2.168.701 total

includes taxes & fees

17 Jun - 18 Jun

14. Hard Rock Hotel San Diego

Gaslamp Quarter, 9.7 km from Mission Bay

Marcos

Rp3.826.260 total

includes taxes & fees

15 Jun - 16 Jun

Premium bedding, pillow-top beds, laptop workspace, free WiFi

15. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

East Village, 9.6 km from Mission Bay

Pooja

Rp3.745.091 total

includes taxes & fees

30 Jun - 1 Jul

Outdoor pool, open 7:00 AM to 10:00 PM, free pool cabanas, pool loungers

16. Hilton Garden Inn San Diego Downtown/Bayside

7.4 km from Mission Bay

Diem

Rp3.888.508 total

includes taxes & fees

6 Jul - 7 Jul

17. Hilton San Diego Bayfront

10 km from Mission Bay

Tristin

Rp4.788.006 total

includes taxes & fees

6 Jul - 7 Jul

18. Hampton Inn & Suites San Diego Airport Liberty Station

5.3 km from Mission Bay

Patricia

Rp3.518.292 total

includes taxes & fees

29 Jun - 30 Jun

19. GreenTree Inn San Diego Mission Bay

Pacific Beach, 3 km from Mission Bay

Tyson

Rp2.937.791 total

includes taxes & fees

15 Jun - 16 Jun

20. Bay Club Hotel & Marina

6.8 km from Mission Bay

Teresa

Rp3.641.833 total

includes taxes & fees

16 Jun - 17 Jun

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Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

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Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach and Dog Beach.

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Top Mission Bay Hotel Reviews

Paradise Point Resort & Spa

8/10 Good

"The resort fees should have been disclosed before we arrived!"

The Sofia Hotel

6/10 Okay

"Although clean, the room was the smallest we’ve ever stayed in, to the point that the sink was in the room not the bathroom. Very nice rain shower, but water didn’t drain properly the first day - it was fixed after notifying the front desk. View out the window was a wall several feet away. Air conditioning unit was loud and rattled all night, and the bed was hard and uncomfortable. Parking was $50 per night, but that appeared to be par for the downtown area."

Best Western Seven Seas

6/10 Okay

"Its San Diego… so not like uts going to be a great deal, but it was reasonably priced. The parking lot was being renovated so it wasn’t great access but still worked. Restaurants there (didn’t eat there though) and it obviously wasn’t the Waldorf but it worked. I did see a bunch of people using the Hot Tub so I’m gonna assume that it worked. All in all and adequate choice for the money."

Bahia Resort Hotel

10/10 Excellent

"I loved my time there! It was a solo trip and I felt safe. My room was clean and the staff was beyond courteous and helpful. Awesome, drinks, dinner, and sunset! I want to being my family there and have the experience of the bay outside our doors and the ocean within walking distance. Thank you for everything."

Search Hotels in Mission Bay, San Diego

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Our top choices for Mission Bay hotels

1. San Diego Mission Bay Resort

2. Hyatt Regency Mission Bay Spa and Marina

3. Paradise Point Resort & Spa

4. The Dana on Mission Bay

5. Crowne Plaza San Diego - Mission Valley by IHG

6. Lafayette Hotel & Club

7. Wyndham San Diego Bayside

8. Embassy Suites by Hilton San Diego Bay Downtown

9. Holiday Inn Express San Diego Airport - Old Town by IHG

10. Wyndham Garden San Diego Near SeaWorld

11. Best Western Plus Hacienda Hotel Old Town

12. Courtyard by Marriott San Diego Airport/Liberty Station

13. The Alcala Hotel Mission Valley/Seaworld

14. Hard Rock Hotel San Diego

15. The Margot Hotel San Diego Gaslamp Quarter, Outset by Hilton

16. Hilton Garden Inn San Diego Downtown/Bayside

17. Hilton San Diego Bayfront

18. Hampton Inn & Suites San Diego Airport Liberty Station

19. GreenTree Inn San Diego Mission Bay

20. Bay Club Hotel & Marina

Where to stay in Mission Bay

Downtown San Diego

Pacific Beach

Mission Beach

Gaslamp Quarter

Ocean Beach

Top Mission Bay Hotel Reviews

Paradise Point Resort & Spa

Frequently asked questions