The Best Hotels Closest to Shelter Island in San Diego - 2026 Updated Prices

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

A beach with sand dunes and a person walking.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Alicia

Rp3.306.109

Rp3.800.207 total

includes taxes & fees

15 Nov - 16 Nov

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

A spacious hotel lobby with a mix of seating arrangements, including a sofa, round tables, and chairs.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

2. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

MANUEL

Rp2.668.608

Rp3.067.431 total

includes taxes & fees

22 Nov - 23 Nov

A balcony with a table set for two, overlooking a marina with numerous boats.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

A marina with multiple boats docked, a multi-story building with outdoor seating, and a clear view of the surrounding coastline.

A spacious lobby with a reception desk, seating area, and a clear view of the elevator.

3. Bay Club Hotel & Marina

0.7 km from Shelter Island

Victoria

Rp2.749.968

Rp3.160.951 total

includes taxes & fees

27 Oct - 28 Oct

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

A modern lobby with a reception desk, seating area, and a large screen.

4. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Jaycie Nicole

Rp3.363.061

Rp3.865.670 total

includes taxes & fees

1 Nov - 2 Nov

A resort with two-story buildings, balconies, and a pool area.

An outdoor bar area with a pool, bar stools, and a variety of bottles.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

A resort with a pool, palm trees, and a building with multiple balconies.

5. Humphreys Half Moon Inn

1 km from Shelter Island

Svenja

Rp2.874.720

Rp3.665.901 total

includes taxes & fees

23 Nov - 24 Nov

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

6. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Julie

Rp2.274.464

Rp2.614.383 total

includes taxes & fees

22 Nov - 23 Nov

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A spacious hotel lobby with a geometric patterned carpet, leather armchairs, a sofa, and a dining table. Large windows offer views of the outside.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

Rp3.075.408

Rp3.535.027 total

includes taxes & fees

22 Nov - 23 Nov

A marina with boats docked, a balcony with chairs, and a view of the water.

A coastal view with a marina, buildings, and a clear sky.

An outdoor seating area with rows of chairs and tables, a green hedge, and a marina with boats in the background.

An outdoor patio with string lights, tables, chairs, and a bar area with bottles.

8. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

Rp2.950.294

Rp3.391.216 total

includes taxes & fees

8 Nov - 9 Nov

A building with a sign reading "the Pearl" and a modern architectural style.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

A modern interior with a stone wall, leather sofa, and pendant lighting.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

9. The Pearl Hotel

1.6 km from Shelter Island

Jane

Rp2.835.306

Rp3.202.510 total

includes taxes & fees

2 Nov - 3 Nov

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

A gym with a treadmill, elliptical, and weight machines.

10. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Elizabeth

Rp2.060.632

Rp2.364.577 total

includes taxes & fees

9 Nov - 10 Nov

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

11. Sea Harbor Hotel

1.4 km from Shelter Island

Roxanne

Rp1.887.371

Rp2.128.016 total

includes taxes & fees

10 Nov - 11 Nov

A square pizza on a wooden board with a fire pit in the background.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

A hotel with a well-maintained lawn, palm trees, and a pool area.

12. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Thomas

Rp2.505.526

Rp2.879.976 total

includes taxes & fees

22 Nov - 23 Nov

A modern restaurant interior with a long counter, multiple seating options, and decorative woven light fixtures.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Deborah

Rp2.802.038

Rp3.220.803 total

includes taxes & fees

15 Nov - 16 Nov

A marina with boats, a yacht, and a balcony with two chairs and a table.

A large, domed building with a central fountain, surrounded by well-maintained gardens and a calm reflective pool.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A hotel with a Mediterranean architectural style, featuring a curved entrance, palm trees, and a well-lit driveway.

14. Kona Kai San Diego

0.3 km from Shelter Island

Michael

Rp3.601.536

Rp5.224.578 total

includes taxes & fees

1 Nov - 2 Nov

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

A multi-level interior with a staircase, black railings, and hanging lights.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

15. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

Rp1.936.368

Rp2.183.341 total

includes taxes & fees

27 Oct - 28 Oct

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A rooftop patio with wicker furniture and palm trees, overlooking a marina.

16. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Sean

Rp1.689.034

Rp1.907.680 total

includes taxes & fees

17 Nov - 18 Nov

A modern hotel lobby with a wooden floor, two white armchairs, a reception desk, an ATM, and a staircase.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

17. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

Rp1.865.856

Rp2.141.070 total

includes taxes & fees

29 Oct - 30 Oct

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

A reception area with a wooden reception desk, a computer, and a chair.

18. Hotel Point Loma

1.5 km from Shelter Island

Clint

Rp1.375.798

Rp1.551.212 total

includes taxes & fees

27 Oct - 28 Oct

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

A modern reception area with a wooden bench and a green hedge.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

19. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

Rp1.530.382

Rp1.725.506 total

includes taxes & fees

29 Oct - 30 Oct

An outdoor patio area with seating arrangements, a pergola, and a green wall.

An outdoor patio with tables and chairs, surrounded by tropical plants and artwork.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

20. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Robert

Rp1.016.965

Rp1.148.611 total

includes taxes & fees

9 Nov - 10 Nov

View all properties

Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,706 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,741 reviews	View
Bay Club Hotel & Marina	9.2 Wonderful 4,048 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,246 reviews	View
Humphreys Half Moon Inn	9.2 Wonderful 3,159 reviews	View

Top Shelter Island Hotel Reviews

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"I love this place. Especially the Del Mar rooms."

Comfort Inn San Diego Airport At The Harbor

10/10 Excellent

"The rpoom was very nice, the staff anmswered all our quiestions gladly and all in all it was a very goopd experenmce Ohn and oit was close to all we wanted"

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent

"A must stay everytime we're in San Diego! This place sets the bar out of reach for most hotels..."

Sheraton San Diego Resort

10/10 Excellent

"Excellent"

Humphreys Half Moon Inn

10/10 Excellent

"This hotel worked so well for my stay in San Diego. Early check in. Close to both the cruise terminal and airport. Beautiful grounds, great restaurant and very nice staff. It would be my choice again if I go back to San Diego."

Ramada by Wyndham San Diego Airport

8/10 Good

"It was clean with a fresh coat of paint. the pool was clean."

The Pearl Hotel

10/10 Excellent

"Charming place in a great location. Would stay again if in the area."

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

Search Hotels Near Shelter Island, San Diego

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Treat yourself

Be picky

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Our top choices for Shelter Island hotels

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2. Hampton Inn & Suites San Diego Airport Liberty Station

3. Bay Club Hotel & Marina

4. Courtyard by Marriott San Diego Airport/Liberty Station

5. Humphreys Half Moon Inn

6. Best Western Plus Island Palms Hotel & Marina

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

8. Hilton San Diego Airport/Harbor Island

9. The Pearl Hotel

10. Best Western Yacht Harbor Hotel

11. Sea Harbor Hotel

12. DoubleTree by Hilton San Diego Bayside

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. Kona Kai San Diego

15. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

16. Comfort Inn San Diego Airport At The Harbor

17. Ramada by Wyndham San Diego Airport

18. Hotel Point Loma

19. Hotel Aqua Mar

20. Samesun Ocean Beach - Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Best Western Plus Island Palms Hotel & Marina

Comfort Inn San Diego Airport At The Harbor

Homewood Suites by Hilton San Diego Airport/Liberty Station

Sheraton San Diego Resort

Humphreys Half Moon Inn

Ramada by Wyndham San Diego Airport

The Pearl Hotel

Other attractions near Shelter Island

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions