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Check prices for these dates

Next weekend
31 Jul - 2 Aug
In two weeks
7 Aug - 9 Aug

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Our top choices for Shelter Island hotels

Exterior

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,599 reviews)
"Hotel was right next to the airport which was really helpful and the hotel was really nice and clean with a good breakfast."
United States
Jason
The price is Rp4.114.066
Rp4.728.913 total
includes taxes & fees
25 Aug - 26 Aug
Homewood Suites by Hilton San Diego Airport/Liberty Station
Courtyard view

2. Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,268 reviews)
"Great place to stay ❤️‼️"
United States
amelinda
The price is Rp3.341.298
Rp3.840.655 total
includes taxes & fees
24 Aug - 25 Aug
Courtyard by Marriott San Diego Airport/Liberty Station
Exterior

3. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,762 reviews)
"We enjoy staying here when we visit San Diego."
United States
Sandra
The price is Rp3.375.787
Rp3.880.367 total
includes taxes & fees
26 Aug - 27 Aug
Bay Club Hotel & Marina
Lobby

4. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,701 reviews)
"Great clean hotel close to the airport. Would definitely stay again."
United States
Aimee
The price is Rp2.960.662
Rp3.403.133 total
includes taxes & fees
23 Aug - 24 Aug
Hampton Inn & Suites San Diego Airport Liberty Station
Property grounds

5. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (3,067 reviews)
"Very nice rooms, helpful staff, and a great location."
United States
alex
The price is Rp3.754.267
Rp4.674.603 total
includes taxes & fees
18 Aug - 19 Aug
Humphreys Half Moon Inn
Exterior

6. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,612 reviews)
"Great Place to stay in San Diego"
United States
Mark
The price is Rp2.991.019
Rp3.438.027 total
includes taxes & fees
23 Aug - 24 Aug
Best Western Plus Island Palms Hotel & Marina
Lobby

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,009 reviews)
"Very clean and super close to the airport. Staff was friendly and helpful!"
United States
Jamie
The price is Rp3.407.940
Rp3.917.258 total
includes taxes & fees
16 Aug - 17 Aug
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Terrace/patio

8. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,205 reviews)
"Wonderful place to stay near the airport. This is a very comfortable hotel in a beautiful convenient location."
United States
Ingrid
The price is Rp3.225.796
Rp3.707.891 total
includes taxes & fees
2 Aug - 3 Aug
Hilton San Diego Airport/Harbor Island
Front of property

9. The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,002 reviews)
"Great place"
United States
Michael
The price is Rp3.146.758
Rp3.554.159 total
includes taxes & fees
2 Aug - 3 Aug
The Pearl Hotel
Gift shop

10. Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,032 reviews)
"Nice smooth easy stay !"
United States
Ryan
The price is Rp2.288.397
Rp2.580.168 total
includes taxes & fees
26 Aug - 27 Aug
Sea Harbor Hotel
Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

11. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.4 out of 10, Very good, (1,985 reviews)
"Was a great hotel"
United States
Natalia
The price is Rp2.586.672
Rp2.968.206 total
includes taxes & fees
29 Jul - 30 Jul
Best Western Yacht Harbor Hotel
View from room

12. The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.4 out of 10, Very good, (782 reviews)
"Nice rooms, great location."
United States
Debbie
The price is Rp3.078.499
Rp3.538.580 total
includes taxes & fees
2 Aug - 3 Aug
The Monsaraz San Diego, Tapestry Collection by Hilton
Bar (on property)

13. DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,042 reviews)
"Great stay"
United States
Jorge
The price is Rp2.995.151
Rp3.442.776 total
includes taxes & fees
24 Aug - 25 Aug
DoubleTree by Hilton San Diego Bayside
Water view

14. Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,003 reviews)
"Great stay!"
United States
Edward
The price is Rp4.832.047
Rp6.631.940 total
includes taxes & fees
23 Aug - 24 Aug
Kona Kai San Diego
Terrace/patio

15. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
7.8 out of 10, Good, (99 reviews)
"Very helpful staff and great location"
United States
Scott
The price is Rp1.923.837
Rp2.169.126 total
includes taxes & fees
3 Aug - 4 Aug
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
Exterior

16. Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,605 reviews)
"Location are perfect and the staff are pretty nice and accommodating."
United States
John
The price is Rp2.398.420
Rp2.708.895 total
includes taxes & fees
3 Aug - 4 Aug
Comfort Inn San Diego Airport At The Harbor
Room, 1 King Bed, Non Smoking (Harbor View) | Beach/ocean view

17. Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.6 out of 10, Good, (1,003 reviews)
"Great location in Port Loma"
United States
Charlie
The price is Rp2.213.940
Rp2.540.496 total
includes taxes & fees
10 Aug - 11 Aug
Ramada by Wyndham San Diego Airport
Standard Room | Blackout curtains, iron/ironing board (on request), free WiFi

18. Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.6 out of 10, Good, (463 reviews)
"Very nice"
United States
Avril
The price is Rp1.876.950
Rp2.116.261 total
includes taxes & fees
27 Jul - 28 Jul
Hotel Point Loma
Exterior detail

19. Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,003 reviews)
"Dave at the front desk was very accommodating and helpful with my check in needs"
United States
Michael
The price is Rp2.167.951
Rp2.444.365 total
includes taxes & fees
26 Aug - 27 Aug
Hotel Aqua Mar
Lobby sitting area

20. Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (546 reviews)
"The room was clean, the staff were helpful, and parking in the area was great"
United States
Jason
The price is Rp1.261.975
Rp1.425.337 total
includes taxes & fees
3 Aug - 4 Aug
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,599 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,268 reviews
View
Exterior
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,762 reviews
View
Lobby
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,701 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
3,067 reviews
View

Top Shelter Island Hotel Reviews

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor

8/10 Good
"Clean older hotel near the harbor. Walking distance to some good restaurants. Rooms clean, parking was a little tight. Close to attractions in San Diego like the USS Midway , the zoo, Balboa Park , and downtown. 10 to 20 minutes away. Airport was near by making it easy to return rental car."
Dale 5-night trip
Posted 3 hours ago
Comfort Inn San Diego Airport At The Harbor

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.
How many hotels will I be able to find near Shelter Island?
Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.