A harbor with multiple sailboats and a bridge in the background.

Search Hotels in Harbor Island, San Diego

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
30 Oct - 1 Nov
Next weekend
6 Nov - 8 Nov

Filter by

Property class

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Harbor Island hotels

A balcony with wicker furniture overlooking a marina and a coastal cityscape.

1. Sheraton San Diego Resort

Sheraton San Diego Resort
4.0 star property
Harbor Island
8.6 out of 10, Excellent, (3,798 reviews)
"I would stay here again"
United States
James
The price is Rp2.103.660
Rp3.335.320 total
includes taxes & fees
22 Nov - 23 Nov
Sheraton San Diego Resort
An outdoor patio with string lights, tables, chairs, and a bar area with bottles.

2. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
Harbor Island
8.8 out of 10, Excellent, (1,224 reviews)
"Excellent place to stay"
United States
Amos
The price is Rp2.950.294
Rp3.391.216 total
includes taxes & fees
8 Nov - 9 Nov
Hilton San Diego Airport/Harbor Island
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

3. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
0.7 km from Harbor Island
9.2 out of 10, Wonderful, (1,741 reviews)
"Love to stay here, very nice accommodations, quiet, great service, the airport shuttle very convenient."
United States
MANUEL
The price is Rp2.668.608
Rp3.067.431 total
includes taxes & fees
22 Nov - 23 Nov
Hampton Inn & Suites San Diego Airport Liberty Station
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

4. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
1 km from Harbor Island
9.4 out of 10, Exceptional, (1,707 reviews)
"Very pleasant stay."
United States
Alicia
The price is Rp3.306.109
Rp3.800.207 total
includes taxes & fees
15 Nov - 16 Nov
Homewood Suites by Hilton San Diego Airport/Liberty Station
A resort with two-story buildings, balconies, and a pool area.

5. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1.8 km from Harbor Island
9.2 out of 10, Wonderful, (3,161 reviews)
"We had a great stay!"
United States
Svenja
The price is Rp2.792.790
Rp3.572.958 total
includes taxes & fees
23 Nov - 24 Nov
Humphreys Half Moon Inn
A balcony with a table set for two, overlooking a marina with numerous boats.

6. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
2 km from Harbor Island
9.2 out of 10, Wonderful, (4,048 reviews)
"Excellent stay!"
Canada
Victoria
The price is Rp2.749.968
Rp3.160.926 total
includes taxes & fees
28 Oct - 29 Oct
Bay Club Hotel & Marina
A modern hotel with a courtyard featuring outdoor seating, a chess table, and a well-maintained lawn.

7. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.4 km from Harbor Island
9.2 out of 10, Wonderful, (1,456 reviews)
"Everything about this place was great."
United States
Evelin
The price is Rp2.605.093
Rp2.994.424 total
includes taxes & fees
2 Nov - 3 Nov
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
A hotel entrance with a stone archway, a reception desk, and potted plants.

8. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
2.9 km from Harbor Island
9.2 out of 10, Wonderful, (1,103 reviews)
"Love the hotel, the breakfast was good and the staff was exceptional."
United States
Patricia
The price is Rp2.611.440
Rp3.001.719 total
includes taxes & fees
25 Nov - 26 Nov
Holiday Inn Express San Diego Airport - Old Town by IHG
A hotel courtyard with outdoor seating, palm trees, and a view of the ocean at dusk.

9. Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
3.3 km from Harbor Island
8.4 out of 10, Very good, (6,364 reviews)
"Close to sites and staff was very kind and helpful"
United States
Sarah
The price is Rp2.750.872
Rp3.818.683 total
includes taxes & fees
29 Oct - 30 Oct
Wyndham San Diego Bayside
A modern interior with a sectional sofa, a glass coffee table, and large windows offering a view of the cityscape.

10. Best Western Plus Bayside Inn

Best Western Plus Bayside Inn
3.0 star property
3.7 km from Harbor Island
9.0 out of 10, Wonderful, (1,020 reviews)
"Very good location, good stay overall"
United States
Mariusz
The price is Rp2.661.855
Rp3.081.097 total
includes taxes & fees
22 Nov - 23 Nov
Best Western Plus Bayside Inn
An outdoor seating area with fire pits, lounge chairs, and a modern building in the background.

11. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.3 km from Harbor Island
8.8 out of 10, Excellent, (1,744 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is Rp3.058.232
Rp3.515.284 total
includes taxes & fees
15 Nov - 16 Nov
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
A hotel lobby with a waterfall feature, outdoor seating area, and multiple floors with balconies.

12. Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4.4 km from Harbor Island
8.4 out of 10, Very good, (1,449 reviews)
"Great hotel"
United States
Thao
The price is Rp2.059.312
Rp2.373.728 total
includes taxes & fees
29 Oct - 30 Oct
Crowne Plaza San Diego - Mission Valley by IHG
A hotel with a central courtyard, palm trees, and a fountain.

13. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.8 km from Harbor Island
8.8 out of 10, Excellent, (1,551 reviews)
"Nice, clean hotel for a quick stay."
United States
Kristen
The price is Rp2.605.093
Rp2.994.424 total
includes taxes & fees
25 Nov - 26 Nov
Hilton Garden Inn San Diego Old Town/SeaWorld Area
An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

14. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 6.3 km from Harbor Island
8.8 out of 10, Excellent, (2,958 reviews)
"Loved staying at Paradise Point!"
United States
victor
The price is Rp4.047.732
Rp5.612.371 total
includes taxes & fees
15 Nov - 16 Nov
Paradise Point Resort & Spa
A spacious lobby with modern furniture, large windows, and a high ceiling with hanging lights.

15. Legacy Resort Hotel & Spa

Legacy Resort Hotel & Spa
4.0 star property
5 km from Harbor Island
9.2 out of 10, Wonderful, (3,114 reviews)
"We really enjoyed our stay. The pool was great and really enjoyed the bar and staff"
United States
Kathy
The price is Rp2.937.870
Rp3.377.100 total
includes taxes & fees
8 Nov - 9 Nov
Legacy Resort Hotel & Spa
A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

16. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
3.3 km from Harbor Island
7.4 out of 10, Good, (4,185 reviews)
"great stay"
United States
Sarah
The price is Rp1.734.234
Rp1.993.416 total
includes taxes & fees
8 Nov - 9 Nov
Wyndham Garden San Diego Near SeaWorld
A pool area with a hot tub, lounge chairs, and umbrellas.

17. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 5.4 km from Harbor Island
9.0 out of 10, Wonderful, (4,480 reviews)
"Really good hotel !!!"
United States
Assy Prune Celia
The price is Rp3.326.720
Rp4.343.517 total
includes taxes & fees
4 Nov - 5 Nov
The Dana on Mission Bay
A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

18. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
3.7 km from Harbor Island
8.8 out of 10, Excellent, (1,016 reviews)
"Very nice cloae to everything stores, restaurants airport."
United States
Regina
The price is Rp2.296.160
Rp2.639.321 total
includes taxes & fees
8 Nov - 9 Nov
Holiday Inn Express San Diego - SeaWorld Area by IHG
An outdoor dining area with tables and chairs, overlooking a beach and ocean.

19. Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 6.5 km from Harbor Island
8.8 out of 10, Excellent, (2,493 reviews)
"Love the location, nice & clean room, helpful staff, beautiful hotel!"
United States
Michael Lynn
The price is Rp2.878.336
Rp4.311.934 total
includes taxes & fees
28 Oct - 29 Oct
Bahia Resort Hotel
A pool area with lounge chairs and a hot tub, overlooking the ocean.

20. The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 8.5 km from Harbor Island
9.4 out of 10, Exceptional, (1,965 reviews)
"Great area to vacation!"
United States
Lisa
The price is Rp3.187.323
Rp3.663.668 total
includes taxes & fees
28 Oct - 29 Oct
The Wayfarer San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels in Harbor Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A balcony with wicker furniture overlooking a marina and a coastal cityscape.
Sheraton San Diego Resort
4.0 star property
8.6
Excellent
3,798 reviews
View
An outdoor patio with string lights, tables, chairs, and a bar area with bottles.
Hilton San Diego Airport/Harbor Island
3.5 star property
8.8
Excellent
1,224 reviews
View
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,741 reviews
View
A hotel courtyard with outdoor seating, palm trees, and a view of the sea.
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,246 reviews
View
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,707 reviews
View

Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.
A large stadium with the sign "Cobo Park" and palm trees around it.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

A pier extending into the ocean with buildings at the end, under a partly cloudy sky.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

A theater marquee with ornate designs and the name "Gaslamp Quarter".

Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

A coastal cityscape with a long sandy beach, a pier, and dense urban buildings.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

Top Harbor Island Hotel Reviews

Hotel del Coronado, Curio Collection by Hilton

Hotel del Coronado, Curio Collection by Hilton

10/10 Excellent
"Room upgraded once present. Very helpful staff."
James 4-night trip
Posted 2 hours ago
Hotel del Coronado, Curio Collection by Hilton

Frequently asked questions

What's it like in Harbor Island?
Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.
Where is the best place to stay in Harbor Island?
Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.
How many hotels should I expect to find in the Harbor Island area?
Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.
If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?
Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.
What is there to do around this San Diego neighbourhood?
San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Marine Corps Recruit Depot or Port of San Diego.