A busy urban street at night with illuminated billboards and a prominent Epson sign.

Search Boutique Hotels in Shinjuku

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Shinjuku Boutique Hotels

Our top choices for Shinjuku boutique hotels

A spacious indoor pool area with lounge chairs and a high ceiling with a skylight.

1. Hotel Chinzanso Tokyo

Hotel Chinzanso Tokyo
5.0 star property
Bunkyo
9.8 out of 10, Exceptional, (1,130 reviews)
"Clean room, good service, beautiful garden and delicate food. Perfect stay for a week."
United States
Michael
The price is Rp4.367.609
Rp5.558.332 total
4 Sept - 5 Sept
Hotel Chinzanso Tokyo
A hotel room with a large bed, a sofa, a small table, and a view of the cityscape.

2. The Capitol Hotel Tokyu

The Capitol Hotel Tokyu
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,000 reviews)
"Location os great"
United States
Yongsoo
The price is Rp9.477.939
Rp11.989.632 total
9 Sept - 10 Sept
The Capitol Hotel Tokyu
A modern spa with a large heated pool, a separate hot tub, and a sauna area.

3. The Tokyo Station Hotel

The Tokyo Station Hotel
4.5 star property
Chiyoda
9.8 out of 10, Exceptional, (1,003 reviews)
"A wonderful hotel, great hospitality and a perfect location for travel. Many restaurants and bars as well."
United States
Matthew
The price is Rp8.084.978
Rp10.227.526 total
4 Sept - 5 Sept
The Tokyo Station Hotel
A modern interior with large windows offering a city view, including a prominent tower.

4. The Gate Hotel Kaminarimon by Hulic

The Gate Hotel Kaminarimon by Hulic
4.0 star property
Taito
9.4 out of 10, Exceptional, (1,003 reviews)
"Nice small hotel very close to the temple and walkable distance to shopping and restaurants. Easy access to multiple stations."
United States
Madan
The price is Rp1.637.064
Rp1.980.847 total
6 Sept - 7 Sept
The Gate Hotel Kaminarimon by Hulic
An outdoor rooftop lounge with a sofa, coffee table, and planters, overlooking a city skyline at night.

5. Palace Hotel Tokyo

Palace Hotel Tokyo
5.0 star property
Chiyoda
9.8 out of 10, Exceptional, (1,002 reviews)
"Great hotel, great location, super helpful staff, and wonderful places to eat."
United Kingdom
Jaclyn
The price is Rp12.404.519
Rp15.691.717 total
3 Sept - 4 Sept
Palace Hotel Tokyo
A modern hotel room with a large window offering a city view, a sofa, a coffee table, and a dining area.

6. The Peninsula Tokyo

The Peninsula Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (1,000 reviews)
"The very best accommodation and our absolutely favorite stay of our trip. Thank you for your hospitality"
United States
Consuelo
The price is Rp10.632.445
Rp13.494.345 total
9 Sept - 10 Sept
The Peninsula Tokyo
The exterior of Solaria Hotel with a modern facade, large glass entrance, and potted plants in front.

7. Solaria Nishitetsu Hotel Ginza

Solaria Nishitetsu Hotel Ginza
3.5 star property
Ginza
9.0 out of 10, Wonderful, (1,002 reviews)
"Staff very friendly and helpful…….location had enough places outside of hotel to venture and eat."
United States
Sylvester
The price is Rp3.423.315
Rp3.765.658 total
6 Sept - 7 Sept
Solaria Nishitetsu Hotel Ginza
A restaurant with tables set for dining, large windows offering a city skyline view, and modern interior design.

8. Shangri-La Tokyo

Shangri-La Tokyo
5.0 star property
Chiyoda
9.6 out of 10, Exceptional, (643 reviews)
"One of the best and most convenient properties in Tokyo"
United States
Ajith
The price is Rp9.635.653
Rp12.233.403 total
11 Sept - 12 Sept
Shangri-La Tokyo
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Shinjuku Hotel Reviews

Shinjuku Granbell Hotel

Shinjuku Granbell Hotel

10/10 Excellent
"The hotel and staff were accommodating."
Stephen Dion 2-night trip
Posted 5 hours ago
Shinjuku Granbell Hotel

Frequently asked questions

What's there to see and do in Shinjuku?
The bars, shopping and sightseeing are just some of the things to enjoy while you're in the area. Top activities and sights around Shinjuku include Tokyo Dome, Tokyo Tower and Tokyo Skytree. You might also want to see interesting spots such as Tokyo Disneyland®, Tokyo DisneySea® and Shibuya Crossing during your trip.
What's the best way to get to my boutique hotel in Shinjuku?
You have a few options for travelling to and around Shinjuku. The closest major airport is Tokyo (HND-Haneda), which is located 11 mi (17.7 km) away. You can walk to nearby metro stations including Shinjuku-sanchome Station, Shinjuku-nishiguchi Station and Higashi-shinjuku Station.