The Best Hotels in Marathon Shores, Marathon - 2026 Updated Prices

A beach with clear turquoise water, palm trees, and people enjoying the sand and sea.

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Our top choices for Marathon Shores hotels

A bar area with a long counter, bar stools, and a view of the water.

1. Fairfield Inn & Suites by Marriott Marathon Florida Keys

1.9 km from Marathon Shores

Ismael

Rp2.700.288 total

includes taxes & fees

25 Oct - 26 Oct

Three colorful drinks on a table with a thatched roof and outdoor seating.

2. Hampton Inn Marathon - Florida Keys

2.1 km from Marathon Shores

Linda

Rp2.628.021 total

includes taxes & fees

13 Oct - 14 Oct

A wooden dock leading to a row of boats, with a thatched-roof building and palm trees in the background.

3. Bonefish Bay Motel

1.6 km from Marathon Shores

Billy

Rp2.225.774 total

includes taxes & fees

10 Oct - 11 Oct

A pool area with lounge chairs and umbrellas, a thatched-roof structure, and a view of the ocean.

4. Glunz Ocean Beach Hotel & Resort

2.5 km from Marathon Shores

PAULA LINN

Rp4.172.705 total

includes taxes & fees

12 Oct - 13 Oct

A marina with a dock, a boat, and a row of buildings with large windows.

5. Coconut Cay Resort & Marina

2.8 km from Marathon Shores

Oscar

Rp1.750.931 total

includes taxes & fees

28 Oct - 29 Oct

A hammock on a sandy beach with palm trees, a pool, and lounge chairs in the background.

6. Seascape Resort & Marina

2.5 km from Marathon Shores

PAOLA

Rp3.310.319 total

includes taxes & fees

13 Oct - 14 Oct

A covered outdoor area with a view of a pool and palm trees.

7. Kingsail Resort

2.9 km from Marathon Shores

IRAN G

Rp1.557.133 total

includes taxes & fees

27 Oct - 28 Oct

An aerial view of a resort with a central pool, multiple buildings, and a beach area with sun loungers.

8. Isla Bella Beach Resort & Spa

8.7 km from Marathon Shores

Andrew

Rp6.527.542 total

includes taxes & fees

26 Oct - 27 Oct

A marina with boats docked, a lighthouse, and a resort with outdoor seating.

9. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

7.1 km from Marathon Shores

Rick

Rp3.959.393 total

includes taxes & fees

18 Oct - 19 Oct

Two hammocks on a sandy beach with a clear blue sky and turquoise water.

10. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

7 km from Marathon Shores

amy

Rp3.509.994 total

includes taxes & fees

21 Oct - 22 Oct

A building with a white exterior, purple doors, and a small patio area with chairs and a table.

11. Siesta Motel

2.6 km from Marathon Shores

Scott

Rp1.360.617 total

includes taxes & fees

8 Oct - 9 Oct

A nighttime pool area with a clear view of the pool, surrounding palm trees, and a building with a sign.

12. Skipjack Resort & Marina

4.8 km from Marathon Shores

Justin

Rp3.787.652 total

includes taxes & fees

8 Oct - 9 Oct

A beach with palm trees, a sandy path, and beach chairs.

13. Aqua Lodge Rentals At Coconut Cay

2.7 km from Marathon Shores

Susan

Rp4.364.962 total

includes taxes & fees

8 Oct - 9 Oct

Three Adirondack chairs on a sandy beach with a view of the ocean and a clear sky.

14. Banana Bay Resort & Marina

5 km from Marathon Shores

Alex

Rp3.083.797 total

includes taxes & fees

11 Oct - 12 Oct

An outdoor seating area with wicker furniture and cushions, a thatched-roof structure, and lush greenery.

15. Tropical Cottages

3.6 km from Marathon Shores

Aaron

Rp1.592.463 total

includes taxes & fees

18 Oct - 19 Oct

A wooden deck with two chairs and a table, overlooking a beach with palm trees and the ocean.

16. Rainbow Bend Resort

8.5 km from Marathon Shores

Adam

Rp2.890.576 total

includes taxes & fees

11 Oct - 12 Oct

A pool area with lounge chairs and umbrellas, surrounded by palm trees.

17. Hawks Cay Resort

13.8 km from Marathon Shores

Katherine

Rp5.437.380 total

includes taxes & fees

14 Oct - 15 Oct

A swimming pool surrounded by palm trees and lounge chairs.

18. Tranquility Bay Beachfront Hotel and Resort

6.6 km from Marathon Shores

Stuart

Rp5.484.075 total

includes taxes & fees

28 Oct - 29 Oct

A marina with several docked boats and a row of small, white cabins with blue roofs.

19. Yacht Haven Marina

4.3 km from Marathon Shores

Lauren

Rp4.678.352 total

includes taxes & fees

19 Oct - 20 Oct

A coastal landscape with clear turquoise waters and a dense tree line under a bright blue sky with scattered clouds.

20. Captain Pips Marina & Hideaway

7.5 km from Marathon Shores

michael

Rp2.675.094 total

includes taxes & fees

9 Oct - 10 Oct

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Where to stay in Marathon Shores

Find the best Marathon Shores areas for the activities you enjoy most.

An aerial view of a coastal area with a large bay, several islands, and a densely populated shoreline.

Little Venice

While there might not be top attractions in Little Venice, you can explore the larger area and discover places like Captain Hooks Marina and Dive Center and Sunset Park Beach.

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A sailboat with white sails on a turquoise sea, a beach with palm trees, and a partly cloudy sky.

Coral Lagoon

Coral Lagoon might not have many top sights, but Captain Hooks Marina and Dive Center and Sunset Park Beach are two attractions nearby that you can check out.

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An aerial view of a coastal town with a beach, clear turquoise waters, and a small island.

Farara Shores

Farara Shores might not have many top sights, but Captain Hooks Marina and Dive Center and Sunset Park Beach are two attractions nearby that you can check out.

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Top Marathon Shores Hotel Reviews

Captain Pips Marina & Hideaway

10/10 Excellent

"My husband and I started coming here about a year and a half ago. We absolutely love it here. You are in the middle part of the keys so you can get to upper and lower keys and still have plenty of time to explore for the day. We have stayed at a couple other places however they do not compare to Captain Pips. It is very quiet there in the evenings with amazing views on the water. The maid Kira is so welcoming. Always has a smile on her face. Anything you need from towels to clean sheets she is happy to help! Staff is friendly, property is well maintained. I won’t stay anywhere else when going there. Prices are great too!!Great place to stay."

Hampton Inn Marathon - Florida Keys

10/10 Excellent

"Great location for Marathon. Near the main road but no audible road noises. Not the cheapest hotel for quality of the rooms but we were very satisfied. 1 hour drive from Key West and a few hours from Miami. We initially planned 2 nights before moving to another area but decided we were comfortable here and booked an extra 2 nights. We got to keep the same room too. Complimentary washing facilities which was very useful and appreciated. Breakfast was good for a continental breakfast. Disappointed that they used disposable cutlery, plates, bowls etc, had apples wrapped in plastic, plastic cups wrapped in plastic. Might be just the way things are done in the US but was very wasteful and not good for the environment. We had a spacious big room with 2 queen beds and a walk out balcony which we could access our car from as it was on the ground floor. Room needs a fresh coat of paint. Air con was working but the unit was a bit noisy! Pool was nice and quiet. Gym had good quality equipment."

Frequently asked questions

What is Marathon Shores like?

Travellers to Marathon's Marathon Shores neighbourhood will be sure to enjoy a stay here. Make sure that you visit Captain Hooks Marina and Dive Center and Marathon Air Museum as part of your Marathon Shores travel plans.

How many hotels will I find in Marathon Shores?

If you're searching for places to stay in Marathon, Expedia has something to meet your needs with 195 Marathon Shores hotels and other accommodation options to choose from.

If I need to cancel my hotel reservation in Marathon Shores, will I receive a refund?

Yes! The majority of hotel room reservations are fully refundable if cancelled before the hotel's cancellation deadline, which is often 24 or 48 hours before your arrival date. If your reservation is non-refundable, it might still be possible to cancel it and get a refund within 24 hours of booking. Put your dates in and click on "Search", then filter by "fully refundable" to view top deals in Marathon Shores.

What can I see and do in this Marathon neighbourhood?

A few attractions you might want to check out while you're in Marathon Shores are Captain Hooks Marina and Dive Center and Marathon Air Museum. Sunset Park Beach and Coco Plum Beach are also worth a visit when you're out sightseeing in Marathon.

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Our top choices for Marathon Shores hotels

1. Fairfield Inn & Suites by Marriott Marathon Florida Keys

2. Hampton Inn Marathon - Florida Keys

3. Bonefish Bay Motel

4. Glunz Ocean Beach Hotel & Resort

5. Coconut Cay Resort & Marina

6. Seascape Resort & Marina

7. Kingsail Resort

8. Isla Bella Beach Resort & Spa

9. Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

10. Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

11. Siesta Motel

12. Skipjack Resort & Marina

13. Aqua Lodge Rentals At Coconut Cay

14. Banana Bay Resort & Marina

15. Tropical Cottages

16. Rainbow Bend Resort

17. Hawks Cay Resort

18. Tranquility Bay Beachfront Hotel and Resort

19. Yacht Haven Marina

20. Captain Pips Marina & Hideaway

Where to stay in Marathon Shores

Little Venice

Coral Lagoon

Farara Shores

Top Marathon Shores Hotel Reviews

Captain Pips Marina & Hideaway

Frequently asked questions

Explore a world of travel with Expedia